Spatial Data Browser
Select Dataset
Risperidone
PZ-1190
Clozapine
risWtSalWt
risDelSalDel
salWtSalDel
risWtRisDel
allWtAllDel
🔍 Clustering Visualization
🔘 UMAP Visualization
📈 Statistics Summary
🧠 Gene Expression (Spatial)
🧠 Gene Expression (Spatial, Aggregate Cluster)
🔘 Gene Expression (UMAP)
🧬 Gene Expression (Barplot)
Visualization Options
Spot Size
Number of Columns
1
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7
Width (px):
Height (px):
SVG DPI:
Show Background Image
Clustering Resolution
Select resolution:
Cluster Selection
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cluster_1
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cluster_22
cluster_23
cluster_24
cluster_25
cluster_26
cluster_27
cluster_28
cluster_29
Update Resolution and Cluster
Samples in Dataset
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Cluster Visualization
UMAP Settings
Color By:
Cluster
Sample
Gene Expression
UMAP Plot
Parameters for filtering statistics
Select metric:
mean
median
sum
Select data type:
raw_data
seurat
range_normalize
quantile_metric
quantile_normalize
Select resolution:
0.05
0.1
0.15
0.2
0.4
0.8
1
Thresholds
Control Mean:
Experiment Mean:
log2(FC):
Statistical test
Test:
T-Student
Wilcoxon
Kolmogorov-Smirnov
P-value:
Download Table
Download TSV
Download CSV
Filtered Statistics Table
Visualization Options
Spot Size
Number of Columns
1
2
3
4
5
6
7
Width (px):
Height (px):
SVG DPI:
Show Background Image
Zero Normalize
Show Legend
Gene & Peak Selection
Percentile Filtering
Input min percentile to remove:
Input max percentile to remove:
Clustering Resolution
Select resolution:
Cluster Selection
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cluster_0
cluster_1
cluster_2
cluster_3
cluster_4
cluster_5
cluster_6
cluster_7
cluster_8
cluster_9
cluster_10
cluster_11
cluster_12
cluster_13
cluster_14
cluster_15
cluster_16
cluster_17
cluster_18
cluster_19
cluster_20
cluster_21
cluster_22
cluster_23
cluster_24
cluster_25
cluster_26
cluster_27
cluster_28
cluster_29
Update Resolution and Cluster
Samples in Dataset
Download PNG
Download SVG
Spatial Gene Expression Plot
Visualization Options
Spot Size
Number of Columns
1
2
3
4
5
6
7
Width (px):
Height (px):
SVG DPI:
Show Background Image
Zero Normalize
Show Legend
Gene & Peak Selection
Clustering Resolution
Select resolution:
cluster_resolution_0.05
cluster_resolution_0.1
cluster_resolution_0.15
cluster_resolution_0.2
cluster_resolution_0.4
cluster_resolution_0.8
Summary Metric
Metric:
mean
median
sum
Samples in Dataset
Download PNG
Download SVG
Aggregated Spatial Expression
Gene Selection
Select Gene:
Gene1
Gene2
Gene3
UMAP Colored by Gene Expression
Visualization Options
Width (px):
Height (px):
Number of Columns
1
2
3
4
5
6
7
SVG DPI:
Same Y Scale
Selecting Data
Select metric:
mean
median
sum
Select data type:
raw_data
seurat
range_normalize
quantile_metric
quantile_normalize
Select resolution:
0.05
0.1
0.15
0.2
0.4
0.8
1
Statistical Test
Test:
T-Student
Wilcoxon
Kolmogorov-Smirnov
Gene & Peak Selection
Cluster Selection
Select All
Deselect All
cluster_0
cluster_1
cluster_2
cluster_3
cluster_4
cluster_5
cluster_6
cluster_7
cluster_8
cluster_9
cluster_10
cluster_11
cluster_12
cluster_13
cluster_14
cluster_15
cluster_16
cluster_17
cluster_18
cluster_19
cluster_20
cluster_21
cluster_22
cluster_23
cluster_24
cluster_25
cluster_26
cluster_27
cluster_28
cluster_29
Update Resolution and Cluster
Download PNG
Download SVG
Barplot of Expression